{"id":1859,"date":"2022-05-25T21:57:35","date_gmt":"2022-05-25T21:57:35","guid":{"rendered":"https:\/\/eccb2022.org\/?page_id=1859"},"modified":"2022-09-07T13:20:31","modified_gmt":"2022-09-07T13:20:31","slug":"ntb-w08","status":"publish","type":"page","link":"https:\/\/eccb2022.org\/ntb-w08\/","title":{"rendered":"NTB-W08"},"content":{"rendered":"\n<div class=\"wp-block-stackable-heading stk-block-heading stk-block stk-6f6b038\" data-block-id=\"6f6b038\"><style>.stk-6f6b038 .stk-block-heading__bottom-line{height:1px !important;background-color:var(u002du002dpaletteColor2,#f7b032) !important;margin-top:12px !important}<\/style><h5 class=\"stk-block-heading__text\"><span style=\"color: var(--paletteColor4, #0081a7);\" class=\"stk-highlight\"><strong>Title<\/strong><\/span><\/h5><div class=\"stk-block-heading__bottom-line\"><\/div><\/div>\n\n\n\n<div class=\"wp-block-stackable-heading stk-block-heading stk-block stk-a88dad2\" data-block-id=\"a88dad2\"><h3 class=\"stk-block-heading__text\">Integration of large-scale data for reference genome development in biodiversity<\/h3><\/div>\n\n\n\n<div class=\"wp-block-stackable-heading stk-block-heading stk-block stk-77074a6\" data-block-id=\"77074a6\"><style>.stk-77074a6 .stk-block-heading__bottom-line{height:1px !important;background-color:var(u002du002dpaletteColor2,#f7b032) !important;margin-top:12px !important}<\/style><h5 class=\"stk-block-heading__text\"><span style=\"color: var(--paletteColor4, #0081a7);\" class=\"stk-highlight\"><strong><span style=\"color: var(--paletteColor4, #0081a7);\" class=\"stk-highlight\"><span style=\"color: var(--paletteColor4, #1a928e);\" class=\"stk-highlight\"><span style=\"color: var(--paletteColor4, #0081a7);\" class=\"stk-highlight\">Workshop details<\/span><\/span><\/span><\/strong><\/span><\/h5><div class=\"stk-block-heading__bottom-line\"><\/div><\/div>\n\n\n\n<ul><li>Date: Wednesday, September 14th<\/li><li>Time: 17:00 to 20:00 CEST<\/li><li>Format: Virtual<\/li><li>Supported by: Amazon<\/li><\/ul>\n\n\n\n<div class=\"wp-block-stackable-heading stk-block-heading stk-block stk-0994530\" data-block-id=\"0994530\"><style>.stk-0994530 .stk-block-heading__bottom-line{height:1px !important;background-color:var(u002du002dpaletteColor2,#f7b032) !important;margin-top:12px !important}<\/style><h5 class=\"stk-block-heading__text\"><span style=\"color: var(--paletteColor4, #0081a7);\" class=\"stk-highlight\"><strong>Organisers<\/strong><\/span><\/h5><div class=\"stk-block-heading__bottom-line\"><\/div><\/div>\n\n\n\n<ul><li><strong>Shilpa Garg<\/strong>, Garg Lab, Department of Biology, UCPH (Denmark)<br><a rel=\"noreferrer noopener\" href=\"mailto:shilpa.garg@bio.ku.dk\" target=\"_blank\">shilpa.garg@bio.ku.dk<\/a> <\/li><\/ul>\n\n\n\n<div class=\"wp-block-stackable-heading stk-block-heading stk-block stk-4a8e43e\" data-block-id=\"4a8e43e\"><style>.stk-4a8e43e .stk-block-heading__bottom-line{height:1px !important;background-color:var(u002du002dpaletteColor2,#f7b032) !important;margin-top:12px !important}<\/style><h5 class=\"stk-block-heading__text\">Topic<\/h5><div class=\"stk-block-heading__bottom-line\"><\/div><\/div>\n\n\n\n<p>Using the latest sequencing technologies (long-reads and Hi-C) and advanced bioinformatics methods (including graphs and k-mers) for reference sequence development and data management for global biodiversity and species conservation.<\/p>\n\n\n\n<div class=\"wp-block-stackable-heading stk-block-heading stk-block stk-4cdfd01\" data-block-id=\"4cdfd01\"><style>.stk-4cdfd01 .stk-block-heading__bottom-line{height:1px !important;background-color:var(u002du002dpaletteColor2,#f7b032) !important;margin-top:12px !important}<\/style><h5 class=\"stk-block-heading__text\">Abstract<\/h5><div class=\"stk-block-heading__bottom-line\"><\/div><\/div>\n\n\n\n<p>Genomics is a key element for resource management and species protection in biodiversity and conservation research. Advances in genomic sequencing technologies provide opportunities to characterize DNA sequences, RNA sequences and epigenetic patterns of diverse species at a higher resolution. However, processing large-scale sequence data types and genome complexities (for example, large genome sizes, high repeat content, polyploidy) remain challenging. This workshop aims to bring scientific expertise across multiple disciplines &#8211; including computer science, bioinformatics, biodiversity, evolutionary biology and genomics &#8211; to present strategies and challenges in the generation and evaluation of high-quality reference genomes and in integrative data management for biodiversity. The workshop will focus on: 1) standard data types and assembly methods and pipelines for high-quality reference assemblies, 2) strategies for genome evaluation, and 3) genome annotation, including examples from humans, microbiomes, chicken, salmon and other animal species. Finally, this workshop will facilitate an understanding of the utility of these genomes in large-scale data management in biodiversity management and conservation and for major genome initiatives, including the Earth BioGenome Project, European Reference Genome Atlas, and Africa BioGenome Project.<\/p>\n\n\n\n<div class=\"wp-block-stackable-heading stk-block-heading stk-block stk-cdd954b\" data-block-id=\"cdd954b\"><style>.stk-cdd954b .stk-block-heading__bottom-line{height:1px !important;background-color:var(u002du002dpaletteColor2,#f7b032) !important;margin-top:12px !important}<\/style><h5 class=\"stk-block-heading__text\">Target Audience<\/h5><div class=\"stk-block-heading__bottom-line\"><\/div><\/div>\n\n\n\n<ul><li>Computer Scientists<\/li><li>Geneticists<\/li><li>Biodiversity researchers<\/li><li>Bioinformaticians<\/li><li>Computational and Evolutionary geneticists<\/li><\/ul>\n\n\n\n<div class=\"wp-block-stackable-heading stk-block-heading stk-block stk-787a858\" data-block-id=\"787a858\"><style>.stk-787a858 .stk-block-heading__bottom-line{height:1px !important;background-color:var(u002du002dpaletteColor2,#f7b032) !important;margin-top:12px !important}<\/style><h5 class=\"stk-block-heading__text\">Programme<\/h5><div class=\"stk-block-heading__bottom-line\"><\/div><\/div>\n\n\n\n<figure class=\"wp-block-table tabla-ntb is-style-regular\" style=\"font-size:15px\"><table><tbody><tr><td><strong>TIME<\/strong><\/td><td><strong>CONTENT  <\/strong>                                                                    <\/td><\/tr><tr><td><span style=\"color: var(--paletteColor4, #0081a7);\" class=\"stk-highlight\"><strong>5:00 \u2013 5:15 pm<\/strong><\/span><\/td><td><strong>Welcome<\/strong><br>Shilpa Garg<\/td><\/tr><tr><td><strong><span style=\"color: var(--paletteColor4, #0081a7);\" class=\"stk-highlight\">5:15 \u2013 5:45 pm<\/span><\/strong><\/td><td><strong>Biodiversity and bioinformatics<\/strong><br><a href=\"http:\/\/zhanggjlab.org\/\" target=\"_blank\" rel=\"noreferrer noopener\">Guojie Zhang<\/a><\/td><\/tr><tr><td><span style=\"color: var(--paletteColor4, #0081a7);\" class=\"stk-highlight\"><strong>5:45 \u2013 6:15 pm<\/strong><\/span><\/td><td><strong>Classified k-mers for genome assembly &amp; analysis<\/strong><br><a href=\"https:\/\/www.mpi-cbg.de\/research\/researchgroups\/currentgroups\/gene-myers\/group-leader\" target=\"_blank\" rel=\"noreferrer noopener\">Gene Myers<\/a><\/td><\/tr><tr><td><strong><span style=\"color: var(--paletteColor4, #0081a7);\" class=\"stk-highlight\">6:15 \u2013 6:45 pm<\/span><\/strong><\/td><td><strong>Chromosome-scale haplotype-resolved assembly\/pangenomics<\/strong><br>Shilpa Garg<\/td><\/tr><tr><td><span style=\"color: var(--paletteColor4, #0081a7);\" class=\"stk-highlight\"><strong>6:45 \u2013 7:15 pm<\/strong><\/span><\/td><td><strong>Cattle pangenomics<\/strong><br><a href=\"https:\/\/usys.ethz.ch\/en\/people\/profile.MjQzOTk4.TGlzdC82MzcsMzIwMTk3MjIy.html\">Danang Crysnanto<\/a><\/td><\/tr><tr><td><span style=\"color: var(--paletteColor4, #0081a7);\" class=\"stk-highlight\"><strong>7:15 \u2013 7:30 pm<\/strong><\/span><br><br><br><span style=\"color: var(--paletteColor4, #0081a7);\" class=\"stk-highlight\"><strong>7:30 \u2013 8:00 pm<\/strong><\/span><\/td><td>Break<br><br><strong>Practical session<\/strong>\u00a0<strong>and closing<\/strong><br>Shilpa Garg<\/td><\/tr><\/tbody><\/table><\/figure>\n","protected":false},"excerpt":{"rendered":"<p>Title Integration of large-scale data for reference genome development in biodiversity Workshop details Date: Wednesday, September 14th Time: 17:00 to 20:00 CEST Format: Virtual Supported by: Amazon Organisers Shilpa Garg, Garg Lab, Department of Biology, UCPH (Denmark)shilpa.garg@bio.ku.dk Topic Using the latest sequencing technologies (long-reads and Hi-C) and advanced bioinformatics methods (including graphs and k-mers) for reference sequence development and data management for global biodiversity and species conservation. Abstract Genomics is a key element for resource management and species protection in biodiversity and conservation research. Advances in genomic sequencing technologies provide opportunities to characterize DNA sequences, RNA sequences and epigenetic patterns\u2026<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"blocksy_meta":{"styles_descriptor":{"styles":{"desktop":"","tablet":"","mobile":""},"google_fonts":[],"version":4},"page_title_panel":"","has_hero_section":"default","7b9ded946d4680066060ddae606a4869":"","hero_section":"type-1","hero_elements":[{"id":"custom_title","enabled":true,"heading_tag":"h1","title":"Inicio"},{"id":"custom_description","enabled":true,"description_visibility":{"desktop":true,"tablet":true,"mobile":false}},{"id":"custom_meta","enabled":false,"meta_elements":[{"id":"author","enabled":true,"label":"Por","has_author_avatar":"yes","avatar_size":25},{"id":"post_date","enabled":true,"label":"El","date_format_source":"default","date_format":"M j, Y"},{"id":"updated_date","enabled":false,"label":"El","date_format_source":"default","date_format":"M j, Y"},{"id":"categories","enabled":false,"label":"Dentro","style":"simple"},{"id":"comments","enabled":true}],"page_meta_elements":{"joined":true,"articles_count":true,"comments":true}},{"id":"breadcrumbs","enabled":false}],"7e7ee7f45a5eac24c3975bb449faee22":"","hero_alignment1":"CT_CSS_SKIP_RULE","hero_margin":40,"hero_alignment2":"center","hero_vertical_alignment":"center","d1ec673d633ad68747a95aca445fd9cb":"","hero_structure":"narrow","9134ae46ae942dc09e310cecafbb9abc":"","page_title_bg_type":"featured_image","custom_hero_background":{"attachment_id":null},"parallax":{"desktop":false,"tablet":false,"mobile":false},"af2025ba232bd9346392fb881545369c":"","hero_height":"250px","pageTitleFont":{"family":"Default","variation":"Default","size":"30px","line-height":"CT_CSS_SKIP_RULE","letter-spacing":"CT_CSS_SKIP_RULE","text-transform":"CT_CSS_SKIP_RULE","text-decoration":"CT_CSS_SKIP_RULE"},"pageTitleFontColor":{"default":{"color":"CT_CSS_SKIP_RULEDEFAULT"}},"pageMetaFont":{"family":"Default","variation":"n6","size":"12px","line-height":"1.3","letter-spacing":"CT_CSS_SKIP_RULE","text-transform":"uppercase","text-decoration":"CT_CSS_SKIP_RULE"},"pageMetaFontColor":{"default":{"color":"CT_CSS_SKIP_RULEDEFAULT"},"hover":{"color":"CT_CSS_SKIP_RULEDEFAULT"}},"page_meta_button_type_font_colors":{"default":{"color":"CT_CSS_SKIP_RULEDEFAULT"},"hover":{"color":"CT_CSS_SKIP_RULEDEFAULT"}},"page_meta_button_type_background_colors":{"default":{"color":"CT_CSS_SKIP_RULEDEFAULT"},"hover":{"color":"CT_CSS_SKIP_RULEDEFAULT"}},"pageExcerptFont":{"family":"Default","variation":"Default","size":"CT_CSS_SKIP_RULE","line-height":"CT_CSS_SKIP_RULE","letter-spacing":"CT_CSS_SKIP_RULE","text-transform":"CT_CSS_SKIP_RULE","text-decoration":"CT_CSS_SKIP_RULE"},"pageExcerptColor":{"default":{"color":"CT_CSS_SKIP_RULEDEFAULT"}},"breadcrumbsFont":{"family":"Default","variation":"Default","size":"CT_CSS_SKIP_RULE","line-height":"CT_CSS_SKIP_RULE","letter-spacing":"CT_CSS_SKIP_RULE","text-transform":"CT_CSS_SKIP_RULE","text-decoration":"CT_CSS_SKIP_RULE"},"breadcrumbsFontColor":{"default":{"color":"CT_CSS_SKIP_RULEDEFAULT"},"initial":{"color":"CT_CSS_SKIP_RULEDEFAULT"},"hover":{"color":"CT_CSS_SKIP_RULEDEFAULT"}},"pageTitleOverlay":{"background_type":"color","background_pattern":"type-1","background_image":{"attachment_id":null,"x":0,"y":0},"gradient":"linear-gradient(135deg,rgba(6,147,227,1) 0%,rgb(155,81,224) 100%)","background_repeat":"repeat","background_size":"auto","background_attachment":"scroll","patternColor":{"default":{"color":"#e5e7ea"}},"overlayColor":{"default":{"color":"CT_CSS_SKIP_RULE"}},"backgroundColor":{"default":{"color":"CT_CSS_SKIP_RULE"}}},"pageTitleBackground":{"background_type":"color","background_pattern":"type-1","background_image":{"attachment_id":null,"x":0,"y":0},"gradient":"linear-gradient(135deg,rgba(6,147,227,1) 0%,rgb(155,81,224) 100%)","background_repeat":"repeat","background_size":"auto","background_attachment":"scroll","patternColor":{"default":{"color":"#e5e7ea"}},"overlayColor":{"default":{"color":"CT_CSS_SKIP_RULE"}},"backgroundColor":{"default":{"color":"var(--paletteColor6)"}}},"pageTitlePadding":{"top":"50px","bottom":"50px","left":"auto","right":"auto","linked":true},"ff59f1ce76d65ee65bad3f06718272f6":"","page_structure_type":"type-3","9015a680e092b06588ef574280471413":"","content_style_source":"inherit","content_style":"wide","vertical_spacing_source":"inherit","content_area_spacing":"both","background":{"background_type":"color","background_pattern":"type-1","background_image":{"attachment_id":null,"x":0,"y":0},"gradient":"linear-gradient(135deg,rgba(6,147,227,1) 0%,rgb(155,81,224) 100%)","background_repeat":"repeat","background_size":"auto","background_attachment":"scroll","patternColor":{"default":{"color":"#e5e7ea"}},"overlayColor":{"default":{"color":"CT_CSS_SKIP_RULE"}},"backgroundColor":{"default":{"color":"CT_CSS_SKIP_RULE"}}},"content_background":{"background_type":"color","background_pattern":"type-1","background_image":{"attachment_id":null,"x":0,"y":0},"gradient":"linear-gradient(135deg,rgba(6,147,227,1) 0%,rgb(155,81,224) 100%)","background_repeat":"repeat","background_size":"auto","background_attachment":"scroll","patternColor":{"default":{"color":"#e5e7ea"}},"overlayColor":{"default":{"color":"CT_CSS_SKIP_RULE"}},"backgroundColor":{"default":{"color":"var(--paletteColor8)"}}},"content_boxed_shadow":{"inherit":false,"blur":18,"spread":-6,"v_offset":12,"h_offset":0,"inset":false,"enable":true,"color":{"color":"rgba(34, 56, 101, 0.04)"}},"boxed_content_spacing":{"desktop":{"top":"40px","bottom":"40px","left":"40px","right":"40px","linked":true},"tablet":{"top":"35px","bottom":"35px","left":"35px","right":"35px","linked":true},"mobile":{"top":"20px","bottom":"20px","left":"20px","right":"20px","linked":true}},"content_boxed_radius":{"top":"3px","bottom":"3px","left":"3px","right":"3px","linked":true},"c17a8304e5e66c0922c2d4f80257a4e2":"","disable_featured_image":"no","disable_share_box":"no","disable_header":"no","disable_footer":"no"},"featured_image_urls":{"full":"","thumbnail":"","medium":"","medium_large":"","large":"","1536x1536":"","2048x2048":""},"post_excerpt_stackable":"<p>Title Integration of large-scale data for reference genome development in biodiversity Workshop details Date: Wednesday, September 14thTime: 17:00 to 20:00 CESTFormat: VirtualSupported by: Amazon Organisers Shilpa Garg, Garg Lab, Department of Biology, UCPH (Denmark)shilpa.garg@bio.ku.dk Topic Using the latest sequencing technologies (long-reads and Hi-C) and advanced bioinformatics methods (including graphs and k-mers) for reference sequence development and data management for global biodiversity and species conservation. Abstract Genomics is a key element for resource management and species protection in biodiversity and conservation research. Advances in genomic sequencing technologies provide opportunities to characterize DNA sequences, RNA sequences and epigenetic patterns of diverse species&hellip;<\/p>\n","category_list":"","author_info":{"name":"victorcuencaharo","url":"https:\/\/eccb2022.org\/author\/victorcuencaharo\/"},"comments_num":"0 comments","_links":{"self":[{"href":"https:\/\/eccb2022.org\/wp-json\/wp\/v2\/pages\/1859"}],"collection":[{"href":"https:\/\/eccb2022.org\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/eccb2022.org\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/eccb2022.org\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/eccb2022.org\/wp-json\/wp\/v2\/comments?post=1859"}],"version-history":[{"count":24,"href":"https:\/\/eccb2022.org\/wp-json\/wp\/v2\/pages\/1859\/revisions"}],"predecessor-version":[{"id":3090,"href":"https:\/\/eccb2022.org\/wp-json\/wp\/v2\/pages\/1859\/revisions\/3090"}],"wp:attachment":[{"href":"https:\/\/eccb2022.org\/wp-json\/wp\/v2\/media?parent=1859"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}